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Celestin Apprentice 5
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testre.map
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Text File
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1996-07-05
|
30KB
|
524 lines
(Linear) MAP of: testre.gcg check: 2116 from: 1 to: 1501
With 209 enzymes: *
MaxCuts: 4
July 1, 1995 12:42 ..
S E B
a c H Ep
A u Do i cu FH M N
l 3 pR n o1 oh s s
w A nI 4 N0 ka e p
I I II I II II I I
/
ATATAACATGAGAGTTTGATCCTGGCTCAGGATGAACGCTGCGCGTGCTTAACACATGCA
1 ---------+---------+---------+---------+---------+---------+ 60
TATATTGTACTCTCAAACTAGGACCGAGTCCTACTTGCGACGCGCACGAATTGTGTACGT
a I * -
b Y N M R V * M N A A R A * M Q -
c I T * -
1 ---------+---------+---------+---------+---------+---------+ 60
d -
e -
f Y L M * C M C -
S
a
A u D E
l 3 p c
w A n i
I I I I
AGTCGAACGAAGCATTTACTTACGATCCCTTCGGGGTGACGAGTTTATGACTGAGTGGCG
61 ---------+---------+---------+---------+---------+---------+ 120
TCAGCTTGCTTCGTAAATGAATGCTAGGGAAGCCCCACTGCTCAAATACTGACTCACCGC
a -
b V E R S I Y L R S L R G D E F M T E W R -
c -
61 ---------+---------+---------+---------+---------+---------+ 120
d -
e -
f T S R L M -
A B B
f s sE B
lM t M pc s C
Il E m 2o m j
Iu I e 4N F e
II I I II I I
/ /
GACGGGTGAGTAACGCGTGGGTAACCTACCTTATACAGGGGGACAACAGTTGGAAACGAC
121 ---------+---------+---------+---------+---------+---------+ 180
CTGCCCACTCATTGCGCACCCATTGGATGGAATATGTCCCCCTGTTGTCAACCTTTGCTG
a -
b T G E * -
c -
121 ---------+---------+---------+---------+---------+---------+ 180
d -
e -
f -
B A
C s f
j p H l
e 2 h I
P 4 a I
I I I I
/
TGCTAATACCGCATAAGCGCACGATGTTGCATGACAACGTGTGAAAAGATTTATCGGTAT
181 ---------+---------+---------+---------+---------+---------+ 240
ACGATTATGGCGTATTCGCGTGCTACAACGTACTGTTGCACACTTTTCTAAATAGCCATA
a M T T C E K I Y R Y -
b -
c M L H D N V * -
181 ---------+---------+---------+---------+---------+---------+ 240
d -
e * Y R M L A R H Q M -
f -
S S
Aa P Ba
H Bvu s F S cu D
g ca9 h a t e3 p
a cI6 A u y fA n
I III I I I II I
/
AAGATGGACCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATC
241 ---------+---------+---------+---------+---------+---------+ 300
TTCTACCTGGGCGCAGACTAATCGATCAACCACTCCATTGCCGAGTGGTTCCGCTGCTAG
a K M D P R L I S * -
b -
c -
241 ---------+---------+---------+---------+---------+---------+ 300
d -
e * N T L Y R S V L A V I -
f -
H B H S H
g s B Ga B aBa
i t s Ede s use
E E r aiI m 9mI
I I F eII A 6FI
I I I III I III
/ /
AGTAGCCGACCTGAGAGGGTGACCGGCCACATTGGGACTGAGACACGGCCCAAACTCCTA
301 ---------+---------+---------+---------+---------+---------+ 360
TCATCGGCTGGACTCTCCCACTGGCCGGTGTAACCCTGACTCTGTGCCGGGTTTGAGGAT
a -
b -
c -
301 ---------+---------+---------+---------+---------+---------+ 360
d -
e L L R G S L T V P W M -
f -
BE T S B
cc s S f H s T
eo p s a h a a
fN R p N a H u
II I I I I I I
/
CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCG
361 ---------+---------+---------+---------+---------+---------+ 420
GCCCTCCGTCGTCACCCCTTATAACGTGTTACCCGCGTTCGGACTACGTCGCTGCGGCGC
a -
b -
c M G A S L M Q R R R V -
361 ---------+---------+---------+---------+---------+---------+ 420
d -
e -
f -
M M
H X b BbR K
g m o aos p
a n I nIa n
I I I III I
/
TGAGCGAAGAAGTATTTCGGTATGTAAAGCTCTATCAGCAGGGAAGATAATGACGGTACC
421 ---------+---------+---------+---------+---------+---------+ 480
ACTCGCTTCTTCATAAAGCCATACATTTCGAGATAGTCGTCCCTTCTATTACTGCCATGG
a M * -
b M T V P -
c S E E V F R Y V K L Y Q Q G R * -
421 ---------+---------+---------+---------+---------+---------+ 480
d -
e -
f -
M
B B sS BS
s s DTpa sn
r a saAc aa
F A au1I AB
I I IIII II
/ /
TGACTAAGAAGCACCGGCTAAATACGTGCCAGCAGCCGCGGTAATACGTATGGTGCAAGC
481 ---------+---------+---------+---------+---------+---------+ 540
ACTGATTCTTCGTGGCCGATTTATGCACGGTCGTCGGCGCCATTATGCATACCACGTTCG
a -
b D * M V Q A -
c -
481 ---------+---------+---------+---------+---------+---------+ 540
d -
e -
f -
BBT
ssa B B
apq f s
WEI i r
III I I
//
GTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGTTTTACAAGTCTGATGTGAAA
541 ---------+---------+---------+---------+---------+---------+ 600
CAATAGGCCTAAATGACCCACATTTCCCTCGCATCCGCCAAAATGTTCAGACTACACTTT
a -
b L S G F T G C K G S V G G F T S L M * -
c -
541 ---------+---------+---------+---------+---------+---------+ 600
d -
e -
f -
C
D Dj M S
s se m f
a aP e c
I II I I
GCCCGTGGCTCAACCACGGTATTGCATTGGAAACTGTAGAACTAGAGTGTCGGAGGGGTA
601 ---------+---------+---------+---------+---------+---------+ 660
CGGGCACCGAGTTGGTGCCATAACGTAACCTTTGACATCTTGATCTCACAGCCTCCCCAT
a -
b -
c -
601 ---------+---------+---------+---------+---------+---------+ 660
d -
e -
f * G R Y Q M -
T
s
Ep T
Ac5 B s
po0 s p
oR9 r R
III I I
//
AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA
661 ---------+---------+---------+---------+---------+---------+ 720
TCACCTTAAGGATCACATCGCCACTTTACGCATCTATAATCCTCCTTGTGGTCACCGCTT
a -
b -
c M R R Y * -
661 ---------+---------+---------+---------+---------+---------+ 720
d -
e -
f -
B
C B p
jT s B u H
ea p s 1 g
Pu G r 0 a
II I I I I
/
GGCGGCTTACTGGACGATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT
721 ---------+---------+---------+---------+---------+---------+ 780
CCGCCGAATGACCTGCTAATGACTGCGACTCCGAGCTTTCGCACCCCTCGTTTGTCCTAA
a -
b -
c -
721 ---------+---------+---------+---------+---------+---------+ 780
d -
e * Q R Q P E F A H P A F L I -
f -
T
t
Eh B
B c1 C s H
cBo1 Cj Bp i
eaR1 je s2 n
feII eP b4 f
IIII II II I
// / /
AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTTGGCTTCCATAGGGAG
781 ---------+---------+---------+---------+---------+---------+ 840
TCTATGGGACCATCAGGTGCGGCATTTGCTACTTATGATCCACAACCGAAGGTATCCCTC
a -
b -
c M N T R C W L P * -
781 ---------+---------+---------+---------+---------+---------+ 840
d -
e L Y G P L G R R L R H I S P T P K W L S -
f * T N A E M -
B E
s c
B PT p o R
a la 2 R s
n eu 4 I a
I II I I I
TCGGTGCCGCAGCTAACGCAATAAGTATTCCACCTGGGGAGTACGTTCGCAAGAATGAAA
841 ---------+---------+---------+---------+---------+---------+ 900
AGCCACGGCGTCGATTGCGTTATTCATAAGGTGGACCCCTCATGCAAGCGTTCTTACTTT
a M K -
b -
c -
841 ---------+---------+---------+---------+---------+---------+ 900
d -
e D T G C S V C Y T N W R P L V N A L I F -
f * R L L Y E V Q P T R E C S H F -
E
T c T
s oP S s
p AOsSa B p
5 v1pau F s NC M5 N
0 a05n9 a m sj s0 s
9 I9ID6 u F pe e9 p
I IIIII I I II II V
////
CTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAA
901 ---------+---------+---------+---------+---------+---------+ 960
GAGTTTCCTTAACTGCCCCTGGGCGTGTTCGCCACCTCGTACACCAAATTAAGCTTCGTT
a L K G I D G D P H K R W S M W F N S K Q -
b -
c -
901 ---------+---------+---------+---------+---------+---------+ 960
d * N S A -
e S L P I S P S G C L R H L M -
f E F S N V P V R V L P P A H P K I R L L -
M M
F b b
o o o
k I I
I I I
CGCGAAGAACCTTACCAAATCTTGACATCCTCTTGACAAACTATGTAATGTAGTCTTTCT
961 ---------+---------+---------+---------+---------+---------+ 1020
GCGCTTCTTGGAATGGTTTAGAACTGTAGGAGAACTGTTTGATACATTACATCAGAAAGA
a R E E P Y Q I L T S S * M * -
b -
c M * -
961 ---------+---------+---------+---------+---------+---------+ 1020
d V R L V K G F R S M -
e -
f A F F R V L D Q C G R S L S H L T T K R -
A
B cB
B s B es
c s c Im
g S g IF
I I I II
TCGGAACAAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGG
1021 ---------+---------+---------+---------+---------+---------+ 1080
AGCCTTGTTCTCACTGTCCACCACGTACCAACAGCAGTCGAGCACAGCACTCTACAACCC
a -
b M V V V S S C R E M L G -
c -
1021 ---------+---------+---------+---------+---------+---------+ 1080
d -
e -
f R F L L S L H H M -
B
s
p
1 B
M F H B 2 s
s a h m 8 m
e u a g 6 A
I I I I I I
TTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTAGCCAGCATTTTAGGTGGGCACTC
1081 ---------+---------+---------+---------+---------+---------+ 1140
AATTCAGGGCGTTGCTCGCGTTGGGAACAGGAATCATCGGTCGTAAAATCCACCCGTGAG
a -
b * -
c -
1081 ---------+---------+---------+---------+---------+---------+ 1140
d -
e -
f * T G C R A C G K D K T A L M -
B B AH
ANNS s s ai F
vccm a a tn o
aiia W H I4 k
IIII I I II I
/ /
TAGGGAGACTGCCCGGGTGAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCC
1141 ---------+---------+---------+---------+---------+---------+ 1200
ATCCCTCTGACGGGCCCACTTGGCCTCCTTCCACCCCTACTGCAGTTTAGTAGTACGGGG
a -
b M T S N H H A P -
c M P L -
1141 ---------+---------+---------+---------+---------+---------+ 1200
d * I M M -
e -
f -
A B
f B T s
l sP a t
I am q E
I Al I I
I II I I
/
TTATGATTTGGGCTACACACGTGCTACAATGGCGTAAACAAAGGGAAGCAAGTGGGTGAC
1201 ---------+---------+---------+---------+---------+---------+ 1260
AATACTAAACCCGATGTGTGCACGATGTTACCGCATTTGTTTCCCTTCGTTCACCCACTG
a -
b Y D L G Y T R A T M A * -
c M I W A T H V L Q W R K Q R E A S G * -
1201 ---------+---------+---------+---------+---------+---------+ 1260
d -
e -
f * V R A V I A Y V F P L L H T V -
H BB
Bi ss
pn mm
l4 AB
II II
/ /
CATGAGCAAATCTCAAAAATAACGTCTCAGTTCGGATTGTAGTCTGCAACTCGACTACAT
1261 ---------+---------+---------+---------+---------+---------+ 1320
GTACTCGTTTAGAGTTTTTATTGCAGAGTCAAGCCTAACATCAGACGTTGAGCTGATGTA
a -
b M S K S Q K * M -
c -
1261 ---------+---------+---------+---------+---------+---------+ 1320
d -
e * N P N Y D A V R S C -
f M * M -
H H
iT N iT X ANNS
nf r nf m vccm
fi u fi n aiia
II I II I IIII
/ / /
GAAGCTGGAATCGCTAGTAATCGCGAATCAGAATGTCGCGGTGAATACGTTCCCGGGTCT
1321 ---------+---------+---------+---------+---------+---------+ 1380
CTTCGACCTTAGCGATCATTAGCGCTTAGTCTTACAGCGCCACTTATGCAAGGGCCCAGA
a -
b K L E S L V I A N Q N V A V N T F P G L -
c M S R * -
1321 ---------+---------+---------+---------+---------+---------+ 1380
d * Y D R I L I D R H I R E R T -
e S A P I A L L R S D S H R P S Y T G P D -
f -
B U
s Rb DNS B
r sa sct s
G aC aoy m
I II III I
/ //
TGTACACACCGCCCGTCACACCATGGGAGTTGGGAATGCCCGAAGTCTGTGACCCAACCG
1381 ---------+---------+---------+---------+---------+---------+ 1440
ACATGTGTGGCGGGCAGTGTGGTACCCTCAACCCTTACGGGCTTCAGACACTGGGTTGGC
a -
b V H T A R H T M G V G N A R S L * -
c M P E V C D P T V -
1381 ---------+---------+---------+---------+---------+---------+ 1440
d K Y V G G T V G H S N P I G S T Q S G V -
e Q V C R G D C W P L Q S H G F D T V W G -
f * V M P T P F A R L R H G L R -
B B
f s
i r
I I
TAAGGAGGGAGCAGCCGAAGG....CTCGATAACTGGGGTGAAGTCGTAACAAGGTATCC
1441 ---------+---------+---------+---------+---------+---------+ 1500
ATTCCTCCCTCGTCGGCTTCC....GAGCTATTGACCCCACTTCAGCATTGTTCCATAGG
a -
b -
c R R E Q P K ? ? S I T G V K S * -
1441 ---------+---------+---------+---------+---------+---------+ 1500
d T L L S C G F ? . E I V P T F D Y C P I -
e Y P P L L R L ? ? R Y S P H L R L L T D -
f L S P A A S P . ? S L Q P S T T V L Y G -
T
1501 - 1501
A
a -
b -
c -
1501 - 1501
d R -
e -
f -
Enzymes that do cut:
AatII AceIII AciI AflIII AluI AlwI ApoI AvaI
AvaII BaeI BanI BbvI BccI BcefI BcgI BfaI
BfiI BmgI BplI Bpu10I BsaAI BsaHI BsaJI BsaWI
BsbI BscGI BslI BsmI BsmAI BsmBI BsmFI BsoFI
Bsp24I Bsp1286I BspEI BspGI BsrI BsrFI BsrGI BssSI
BstEII Cac8I CjeI CjeI CjePI CjePI CviJI CviRI
DdeI DpnI DsaI EaeI EciI EcoNI EcoO109I EcoRI
EcoRII FauI FokI GdiII HaeIII HgaI HgiEII HhaI
Hin4I HinfI HphI KpnI MaeII MaeIII MboII MluI
MmeI MnlI MseI MspI MspA1I MwoI NciI NcoI
NlaIII NlaIV NruI NspI NspV PleI PmlI PshAI
Psp5II RsaI SacII SanDI Sau96I Sau3AI ScrFI SfaNI
SfcI SmaI SnaBI SspI StyI TaqI TaqII TauI
TfiI ThaI TseI Tsp45I Tsp509I TspRI Tth111II UbaCI
XmnI
Enzymes that do not cut:
AccI AflII AhdI AlwNI ApaI ApaBI ApaLI AscI
AvrII BamHI BanII BbsI Bce83I BclI BglI BglII
BpmI Bpu1102I BsaI BsaBI BsaXI BseRI BsgI BsiEI
BsiHKAI BspLU11I BspMI BsrBI BsrDI BssHII Bst1107I BstXI
BstYI Bsu36I ClaI DraI DraIII DrdI DrdII EagI
EarI Eco47III Eco57I EcoRV FseI FspI HaeI HaeII
HincII HindIII HpaI MscI MslI MunI NarI NdeI
NgoAIV NheI NotI NsiI PacI Pfl1108I PflMI PinAI
PmeI Psp1406I PstI PvuI PvuII RcaI RleAI RsrII
SacI SalI SapI ScaI SexAI SfiI SgfI SgrAI
SpeI SphI SrfI Sse8387I Sse8647I StuI SunI SwaI
Tth111I VspI XbaI XcmI XhoI
Enzymes excluded; MinCuts: 1 MaxCuts: 4
AciI AluI BbvI BfaI BsaJI BscGI BslI BsoFI
Cac8I CjeI CjePI CviJI CviRI DdeI HphI MaeII
MaeIII MnlI MspI MwoI NlaIII NlaIV ScrFI TaqI
ThaI TseI Tsp45I
